Publications

2024

1. medRxiv

   SCIseg: Automatic Segmentation of T2-weighted Hyperintense Lesions in Spinal Cord Injury

   Naga Karthik Enamundram*, Jan Valosek*, Andrew C Smith, Dario Pfyffer, Simon Schading-Sassenhausen, Lynn Farner, Kenneth Arnold Weber II, Patrick Freund, and Julien Cohen-Adad

   medRxiv, 2024

   *shared first authorship

   Bib PDF Code

   @article{Enamundram2024.01.03.24300794,
     author = {Enamundram*, Naga Karthik and Valosek*, Jan and Smith, Andrew C and Pfyffer, Dario and Schading-Sassenhausen, Simon and Farner, Lynn and II, Kenneth Arnold Weber and Freund, Patrick and Cohen-Adad, Julien},
     title = {SCIseg: Automatic Segmentation of T2-weighted Hyperintense Lesions in Spinal Cord Injury},
     elocation-id = {2024.01.03.24300794},
     year = {2024},
     doi = {10.1101/2024.01.03.24300794},
     publisher = {Cold Spring Harbor Laboratory Press},
     url = {https://www.medrxiv.org/content/early/2024/01/03/2024.01.03.24300794},
     journal = {medRxiv},
     note = {*shared first authorship}
   }

2023

1. arXiv

   Towards contrast-agnostic soft segmentation of the spinal cord

   Sandrine Bédard*, Naga Karthik Enamundram*, Charidimos Tsagkas, Emanuele Pravatà, Cristina Granziera, Andrew Smith, Kenneth Arnold Weber II, and Julien Cohen-Adad

   2023

   *shared first authorship

   Bib PDF Code

   @misc{bédard2023contrastagnostic,
     title = {Towards contrast-agnostic soft segmentation of the spinal cord},
     author = {Bédard*, Sandrine and Enamundram*, Naga Karthik and Tsagkas, Charidimos and Pravatà, Emanuele and Granziera, Cristina and Smith, Andrew and II, Kenneth Arnold Weber and Cohen-Adad, Julien},
     year = {2023},
     eprint = {2310.15402},
     archiveprefix = {arXiv},
     primaryclass = {eess.IV},
     note = {*shared first authorship}
   }

2. IEEE OJEMB

   Uncertainty Estimation in Unsupervised MR-CT Synthesis of Scoliotic Spines

   Enamundram Naga Karthik, Farida Cheriet, and Catherine Laporte

   IEEE Open Journal of Engineering in Medicine and Biology, 2023

   Bib PDF Code

   @article{10086579,
     author = {Naga Karthik, Enamundram and Cheriet, Farida and Laporte, Catherine},
     journal = {IEEE Open Journal of Engineering in Medicine and Biology},
     title = {Uncertainty Estimation in Unsupervised MR-CT Synthesis of Scoliotic Spines},
     year = {2023},
     volume = {},
     number = {},
     pages = {1-7},
     doi = {10.1109/OJEMB.2023.3262965},
   }

2022

1. MELBA

   Label fusion and training methods for reliable representation of inter-rater uncertainty

   Andreanne Lemay, Charley Gros, Enamundram Naga Karthik, and Julien Cohen-Adad

   Machine Learning for Biomedical Imaging, 2022

   Bib PDF

   @article{melba:2022:031:lemay,
     title = {Label fusion and training methods for reliable representation of inter-rater uncertainty},
     author = {Lemay, Andreanne and Gros, Charley and Naga Karthik, Enamundram and Cohen-Adad, Julien},
     journal = {Machine Learning for Biomedical Imaging},
     volume = {1},
     issue = {January 2023 issue},
     year = {2022},
     pages = {1--27},
     issn = {2766-905X},
     doi = {https://doi.org/10.59275/j.melba.2022-db5c},
     url = {https://melba-journal.org/2022:031},
   }

2. MedNeurIPS

   Segmentation of Multiple Sclerosis Lesion across Hospitals: Learn Continually or Train from Scratch?

   Enamundram Naga Karthik, Anne Kerbrat, Pierre Labauge, Tobias Granberg, Jason Talbott, Daniel S Reich, Massimo Filippi, Rohit Bakshi, Virginie Callot, Sarath Chandar, and Julien Cohen-Adad

   MedNeurIPS: Medical Imaging Meets NeurIPS Workshop, 2022

   Bib PDF Code

   @article{nagakarthik2022Segmentation,
     title = {Segmentation of Multiple Sclerosis Lesion across Hospitals: Learn Continually or Train from Scratch?},
     author = {Naga Karthik, Enamundram and Kerbrat, Anne and Labauge, Pierre and Granberg, Tobias and Talbott, Jason and Reich, Daniel S and Filippi, Massimo and Bakshi, Rohit and Callot, Virginie and Chandar, Sarath and Cohen-Adad, Julien},
     journal = {MedNeurIPS: Medical Imaging Meets NeurIPS Workshop},
     year = {2022},
   }

2021

1. SPIE

   Three-dimensional segmentation of the scoliotic spine from MRI using unsupervised volume-based MR-CT synthesis

   Enamundram M. V. Naga Karthik, Catherine Laporte, and Farida Cheriet

   In Medical Imaging 2021: Image Processing, 2021

   Bib PDF

   @inproceedings{10.1117/12.2580677,
     author = {Karthik, Enamundram M. V. Naga and Laporte, Catherine and Cheriet, Farida},
     title = {{Three-dimensional segmentation of the scoliotic spine from MRI using unsupervised volume-based MR-CT synthesis}},
     volume = {11596},
     booktitle = {Medical Imaging 2021: Image Processing},
     editor = {Išgum, Ivana and Landman, Bennett A.},
     organization = {International Society for Optics and Photonics},
     publisher = {SPIE},
     pages = {115961H},
     keywords = {Vertebrae segmentation , Scoliosis , Cross-modality synthesis, Volume translation , 3D CycleGAN},
     year = {2021},
     doi = {10.1117/12.2580677},
     url = {https://doi.org/10.1117/12.2580677},
   }

2020

1. JASA

   Automatic tongue surface extraction from three-dimensional ultrasound vocal tract images

   Enamundram M. V. Naga Karthik, Elham Karimi, Steven M. Lulich, and Catherine Laporte

   The Journal of the Acoustical Society of America, 2020

   Bib

   @article{doi:10.1121/10.0000891,
     author = {Naga Karthik, Enamundram M. V. and Karimi, Elham and Lulich, Steven M. and Laporte, Catherine},
     title = {Automatic tongue surface extraction from three-dimensional ultrasound vocal tract images},
     journal = {The Journal of the Acoustical Society of America},
     volume = {147},
     number = {3},
     pages = {1623-1633},
     year = {2020},
     doi = {10.1121/10.0000891},
     url = {https://doi.org/10.1121/10.0000891},
     eprint = {https://doi.org/10.1121/10.0000891}
   }